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Modern smart grids aim to deliver exceptional reliability and operational flexibility in power delivery. Contemporary electrical networks rely on synchronized wide-area monitoring tools, notably Phasor Measurement Units (PMUs), to supply instantaneous system status updates. These devices support prompt problem identification and corrective actions while ensuring uninterrupted grid operation. The surge in available measurement data has accelerated the adoption of machine learning techniques for tasks such as power system protection and state estimation. This work presents an intelligent fault detection and classification (FD&C) framework for transmission lines that employs an auto-encoder neural network architecture. The study evaluates and contrasts the capabilities of a Multi-Layer Extreme Learning Machine (ML-ELM) with those of a Stacked Auto-Encoder (SAE) neural network. These models are further benchmarked against established classifier approaches that rely on wavelet-based feature extraction, as well as against various other deep learning strategies. The proposed auto-encoder solutions attain perfect (100%) fault detection rates and achieve fault classification accuracies of 99.92% and 99.79%, all while demanding far less computation time during the testing phase. The ML-ELM variant stands out for its efficiency, maintaining excellent classification performance with both training and testing durations below 50 milliseconds. To reflect practical field conditions, the models were rigorously tested on datasets incorporating additive noise levels corresponding to signal-to-noise ratios (SNR) between 10 dB and 40 dB. Validation was performed using simulated data from the IEEE 39-bus benchmark system.